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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs78861425 chr20:3381728 C/T 1.15E-7 404 15.83 11.63 6.83 KM Plot
LGG rs78900523 chr14:20752098 A/T 2.22E-5 394 15.68 15.63 8.75 KM Plot
LGG rs78909890 chr5:155981874 G/A 5.1E-6 406 15.33 15.23 15.37 KM Plot
LGG rs78910396 chr2:228075265 C/G 0 406 15.72 14.43 1.23 KM Plot
LGG rs7893990 chr10:100664776 G/T 5.13E-5 407 14.57 19.17 11.67 KM Plot
LGG rs7895283 chr10:11701042 G/T 3.65E-5 407 15.35 14.6 0 KM Plot
LGG rs7895742 chr10:63340372 C/G 3.74E-5 402 15.97 11.43 17.88 KM Plot
LGG rs7896627 chr10:64046354 T/G 0.000106 399 12.17 15.63 15.88 KM Plot
LGG rs7897018 chr10:111056614 A/G 2.24E-8 407 6.83 14.9 15.37 KM Plot
LGG rs78971787 chr17:48606998 G/A 6.13E-5 406 15.18 17.43 4.1 KM Plot
LGG rs79036679 chr3:153675610 C/A 0 397 15.17 18.7 0.23 KM Plot
LGG rs79036740 chr17:48513053 C/G 1.78E-5 406 15.17 18.38 14.12 KM Plot
LGG rs7904465 chr10:64002393 G/A 0.000175 402 12.17 15.57 15.78 KM Plot
LGG rs79062678 chr6:36058203 C/T 9.41E-10 407 15.47 15.2 6.15 KM Plot
LGG rs7906383 chr10:63328599 T/C 3.82E-5 400 15.93 11.63 17.88 KM Plot